Upload Metagenomics Data

Upload a CSV file with metagenomics results. Select a format from "Example Data" below to see samples.
Need help? Make sure your CSV file follows the expected format. View existing uploads for reference.
Metagenomics Examples
Download Standard ExampleDownload Single ExampleDownload Batch Example
Expected CSV Format

The CSV file should contain the following columns:

  • CMMI_ID- Participant identifier (required)
  • STUDY_ID- Study identifier
  • SAMPLE_ID- Unique sample identifier
  • SAMPLE_TYPE- Type of sample (e.g., Stool, Swab)
  • COLLECTION_DATE- Date of sample collection (YYYY-MM-DD)
  • SEQUENCING_TECHNOLOGY- e.g., Illumina, Oxford Nanopore
  • TAXONOMIC_ANNOTATIONS- JSON or formatted string of taxa
  • FUNCTIONAL_ANNOTATIONS- JSON or formatted string of functions
  • Other Fields- GEOGRAPHIC_LOCATION, LIBRARY_PREPARATION_METHOD, READ_LENGTH, INSTRUMENT_MODEL, RUN_ID, ANALYSIS_ID
Metagenomics

Genomic analysis of microbial communities directly from environmental or clinical samples.

Learn more →
Biofluid

Biological fluid sample collected for analysis (e.g., blood, urine, plasma).

Learn more →