Example: Metabolomics Regression 20260106_082133Completed

CLI Command (Copy-Paste Ready)

OMP_NUM_THREADS=1 OPENBLAS_NUM_THREADS=1 MKL_NUM_THREADS=1 VECLIB_MAXIMUM_THREADS=1 NUMEXPR_NUM_THREADS=1 /opt/ml-env/bin/python /app/scripts/ml_pipeline.py --config /app/public/ml_results/83/job_config.json

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"frequency": 0.2}, {"feature": "metabolite_26", "count": 1, "frequency": 0.2}], "feature_importance": {"metabolite_1": {"mean": 0.44176626426561966, "std": 0.022853118439220554}, "metabolite_2": {"mean": 0.12571391139950533, "std": 0.020508102976349824}, "metabolite_3": {"mean": 0.06866062002887635, "std": 0.012127045907874471}, "metabolite_4": {"mean": 0.2823908221432863, "std": 0.026682219546454562}, "metabolite_10": {"mean": 0.011624214848396552, "std": 0.002190786628456188}, "metabolite_12": {"mean": 0.01546163173788892, "std": 0.0}, "metabolite_27": {"mean": 0.013237248256334443, "std": 0.001449475846394688}, "metabolite_30": {"mean": 0.015203436530413506, "std": 0.003502868614718202}, "metabolite_41": {"mean": 0.01350290482046999, "std": 0.0013680668212484128}, "metabolite_49": {"mean": 0.011938969500982187, "std": 0.0024078053934707662}, "metabolite_5": {"mean": 0.021475048124106506, "std": 0.0012140552075766958}, "metabolite_21": {"mean": 0.014273912809667633, "std": 0.0}, "metabolite_35": {"mean": 0.012556755449248157, "std": 0.0}, "metabolite_9": {"mean": 0.011516705322121481, "std": 0.0}, "metabolite_26": {"mean": 0.01749196510262308, "std": 0.0}, "metabolite_13": {"mean": 0.011368905436013989, "std": 0.0}, "metabolite_32": {"mean": 0.0114225933644394, "std": 0.0}}, "charts": {"feature_importance": "feature_selection_frequency.png", "scatter_plot_train": "prediction_scatter_train.png", "scatter_plot_test": "prediction_scatter_test.png"}, "reports": ["report_83.md"]}

/app/multiomics_analysis/visualization/charts.py:71: SyntaxWarning: invalid escape sequence '\p'
  label=f'Mean ROC (AUC = {mean_auc:.2f} $\pm$ {std_auc:.2f})',
Starting pipeline execution for Job: 83
Loaded data: (200, 50) features, (200,) targets.
Running nested cross-validation...
Generating visualizations...
Generating reports...
Warning: weasyprint not installed. PDF report skipped.
Warning: python-docx not installed. DOCX report skipped.
Warning: excel writer dependency missing. Excel report skipped.
Analysis complete. Results saved to /app/public/ml_results/83